2 good batts will deff help to attain cranking speed to start,but for getting fuel to the inj it should not be a problem.
are you 100% sure all wires and connections are good?
Is the PMD known good?
Why was the engine put in storage? running issue ?or a cratered vehicle? What is the complete history?
A new engine dont mean a new IP as well. The IP itself could be the culprit.Maybe the Fuel solenoid is sticking (gummed up)after sitting for so long? Might be time to at least have the IP tested.
I never had a problem bleeding and starting a 6.5 engine i have rebuild or changed fuel components on within 5 min
98 GMC sierra 2500 ext cab 4x4 auto tr 6.5 td 252000 km. needs new engine, next project
95 GMC sierra LE 2500 ext cab sh box 4x4 auto tr 6.5 td 328.000 km. my wife's truck .remote pmd on cooler
89 GMC sierra SLE 1500 ext cab 4x4 auto tr 6.2 720000 km engine swap at 665000 km because of broken oil cooler line. 6 bolt wheels.
Waldon wheelloader repowered with a 6.2 na