As was mentioned earlier, "to eliminate hot spots"
The factory heads have some areas that the coolant can stagnate in and the extra flow will cause more turbulence and result in the mixing of cooler water being routed into these "Dead zones"
The bottom line is less head problems such as cracking.
My personal opinion is that GM did this as a stop gap measure to redesigning the heads.
Retooling is costly any way you cut it and when an engine design is slated for termination (production end) they are not going to spend the $$$
The addition of the dual stats and different pump was a cheap fix and it seems to have helped for sure.
It would be interesting to see if the heads coming from Navistar and also the ones from the after market (clear water) are the same inside as far as flow asd the GM heads or if the flow issue was fixed as well as the thickness of the head in the crack prone areas.
Just some thoughts
Robyn