It's been 15 years...
Run the TDC offset learn process. You want it to "learn" between -1.6 to -1.95, IIRC. Hopefully, someone like JK will chime in with the optimal value, or, I'm sure there's some old threads around with all the gory details. Adjust the pump and relearn until you get it right. Done. Ignore any other values the scanner shows you.
The Constitution needs to be re-read, not re-written!
If you can't handle Dr. Seuss, how will you handle real life?
Current oil burners: MB GLK250 BlueTEC, John Deere X758
New ride: MB GLS450 - most stately
Gone but not forgotten: '87 F350 7.3, '93 C2500 6.5, '95 K2500 6.5, '06 K2500HD 6.6, '90 MB 350SDL, Kubota 7510